SQUAT: A web tool to mine human, murine and avian SAGE data.Reportar como inadecuado




SQUAT: A web tool to mine human, murine and avian SAGE data. - Descarga este documento en PDF. Documentación en PDF para descargar gratis. Disponible también para leer online.

1 LIRIS - Laboratoire d-InfoRmatique en Image et Systèmes d-information 2 CGMC - Centre de génétique moléculaire et cellulaire 3 DM2L - Data Mining and Machine Learning LIRIS - Laboratoire d-InfoRmatique en Image et Systèmes d-information 4 LMV - Laboratoire Magmas et Volcans

Abstract : BACKGROUND: There is an increasing need in transcriptome research for gene expression data and pattern warehouses. It is of importance to integrate in these warehouses both raw transcriptomic data, as well as some properties encoded in these data, like local patterns. DESCRIPTION: We have developed an application called SQUAT SAGE Querying and Analysis Tools which is available at: http:-bsmc.insa-lyon.fr-squat-. This database gives access to both raw SAGE data and patterns mined from these data, for three species human, mouse and chicken. This database allows to make simple queries like -In which biological situations is my favorite gene expressed?- as well as much more complex queries like: . Connections with external web databases enrich biological interpretations, and enable sophisticated queries. To illustrate the power of SQUAT, we show and analyze the results of three different queries, one of which led to a biological hypothesis that was experimentally validated. CONCLUSION: SQUAT is a user-friendly information retrieval platform, which aims at bringing some of the state-of-the-art mining tools to biologists.





Autor: Johan Leyritz - Stéphane Schicklin - Sylvain Blachon - Céline Keime - Céline Robardet - Jean-François Boulicaut - Jérémy Be

Fuente: https://hal.archives-ouvertes.fr/



DESCARGAR PDF




Documentos relacionados