Candidate gene analysis of spontaneous preterm delivery: New insights from re-analysis of a case-control study using case-parent triads and control-mother dyadsReportar como inadecuado




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BMC Medical Genetics

, 12:174

Genetic epidemiology and genetic associations

Abstract

BackgroundSpontaneous preterm delivery PTD has a multifactorial etiology with evidence of a genetic contribution to its pathogenesis. A number of candidate gene case-control studies have been performed on spontaneous PTD, but the results have been inconsistent, and do not fully assess the role of how two genotypes can impact outcome. To elucidate this latter point we re-analyzed data from a previously published case-control candidate gene study, using a case-parent triad design and a hybrid design combining case-parent triads and control-mother dyads. These methods offer a robust approach to genetic association studies for PTD compared to traditional case-control designs.

MethodsThe study participants were obtained from the Norwegian Mother and Child Cohort Study MoBa. A total of 196 case triads and 211 control dyads were selected for the analysis. A case-parent triad design as well as a hybrid design was used to analyze 1,326 SNPs from 159 candidate genes. We compared our results to those from a previous case-control study on the same samples. Haplotypes were analyzed using a sliding window of three SNPs and a pathway analysis was performed to gain biological insight into the pathophysiology of preterm delivery.

ResultsThe most consistent significant fetal gene across all analyses was COL5A2. The functionally similar COL5A1 was significant when combining fetal and maternal genotypes. PON1 was significant with analytical approaches for single locus association of fetal genes alone, but was possibly confounded by maternal effects. Focal adhesion hsa04510, Cell Communication hsa01430 and ECM receptor interaction hsa04512 were the most constant significant pathways.

ConclusionThis study suggests a fetal association of COL5A2 and a combined fetal-maternal association of COL5A1 with spontaneous PTD. In addition, the pathway analysis implied interactions of genes affecting cell communication and extracellular matrix.

Keywordscase-parent triad analysis hybrid design haplotype pathway analysis COL5A2 COL5A1 Electronic supplementary materialThe online version of this article doi:10.1186-1471-2350-12-174 contains supplementary material, which is available to authorized users.

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Autor: Solveig Myking - Ronny Myhre - Håkon K Gjessing - Nils-Halvdan Morken - Verena Sengpiel - Scott M Williams - Kelli K Ry

Fuente: https://link.springer.com/







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