High Order Gene-Gene Interactions in Eight Single Nucleotide Polymorphisms of Renin-Angiotensin System Genes for Hypertension Association StudyReportar como inadecuado




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BioMed Research International - Volume 2015 2015, Article ID 454091, 11 pages -

Research Article

Department of Electronic Engineering, National Kaohsiung University of Applied Sciences, Kaohsiung 80778, Taiwan

Department of Medical Laboratory Science and Biotechnology, Kaohsiung Medical University, Kaohsiung 80708, Taiwan

Department of Chemical Engineering & Institute of Biotechnology and Chemical Engineering, I-Shou University, Kaohsiung 84001, Taiwan

Cancer Center, Translational Research Center, Kaohsiung Medical University Hospital, Kaohsiung Medical University, Kaohsiung 80708, Taiwan

Institute of Medical Science and Technology, National Sun Yat-sen University, Kaohsiung 80424, Taiwan

Research Center of Environmental Medicine, Kaohsiung Medical University, Kaohsiung 80708, Taiwan

Department of Biomedical Science and Environmental Biology, Kaohsiung Medical University, Kaohsiung 80708, Taiwan

Received 23 January 2015; Accepted 20 March 2015

Academic Editor: Limei Qiu

Copyright © 2015 Cheng-Hong Yang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

Abstract

Several single nucleotide polymorphisms SNPs of renin-angiotensin system RAS genes are associated with hypertension HT but most of them are focusing on single locus effects. Here, we introduce an unbalanced function based on multifactor dimensionality reduction MDR for multiloci genotypes to detect high order gene-gene SNP-SNP interaction in unbalanced cases and controls of HT data. Eight SNPs of three RAS genes angiotensinogen, AGT; angiotensin-converting enzyme, ACE; angiotensin II type 1 receptor, AT1R in HT and non-HT subjects were included that showed no significant genotype differences. In 2- to 6-locus models of the SNP-SNP interaction, the SNPs of AGT and ACE genes were associated with hypertension bootstrapping odds ratio Boot-OR = 1.972~3.785; 95%, confidence interval CI 1.26~6.21; . In 7- and 8-locus model, SNP A1166C of AT1R gene is joined to improve the maximum Boot-OR values of 4.050 to 4.483; CI = 2.49 to 7.29; . In conclusion, the epistasis networks are identified by eight SNP-SNP interaction models. AGT, ACE, and AT1R genes have overall effects with susceptibility to hypertension, where the SNPs of ACE have a mainly hypertension-associated effect and show an interacting effect to SNPs of AGT and AT1R genes.





Autor: Cheng-Hong Yang, Yu-Da Lin, Shyh-Jong Wu, Li-Yeh Chuang, and Hsueh-Wei Chang

Fuente: https://www.hindawi.com/



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