Microsatellite-based phylogeny of Indian domestic goatsReport as inadecuate

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BMC Genetics

, 9:11

First Online: 28 January 2008Received: 25 July 2007Accepted: 28 January 2008


BackgroundThe domestic goat is one of the important livestock species of India. In the present study we assess genetic diversity of Indian goats using 17 microsatellite markers. Breeds were sampled from their natural habitat, covering different agroclimatic zones.

ResultsThe mean number of alleles per locus NA ranged from 8.1 in Barbari to 9.7 in Jakhrana goats. The mean expected heterozygosity He ranged from 0.739 in Barbari to 0.783 in Jakhrana goats. Deviations from Hardy-Weinberg Equilibrium HWE were statistically significant P < 0.05 for 5 loci breed combinations. The DA measure of genetic distance between pairs of breeds indicated that the lowest distance was between Marwari and Sirohi 0.135. The highest distance was between Pashmina and Black Bengal. An analysis of molecular variance indicated that 6.59% of variance exists among the Indian goat breeds. Both a phylogenetic tree and Principal Component Analysis showed the distribution of breeds in two major clusters with respect to their geographic distribution.

ConclusionOur study concludes that Indian goat populations can be classified into distinct genetic groups or breeds based on the microsatellites as well as mtDNA information.

Electronic supplementary materialThe online version of this article doi:10.1186-1471-2156-9-11 contains supplementary material, which is available to authorized users.

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Author: Pramod K Rout - Manjunath B Joshi - Ajoy Mandal - D Laloe - Lalji Singh - Kumarasamy Thangaraj

Source: https://link.springer.com/article/10.1186/1471-2156-9-11

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