High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1Reportar como inadecuado




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Standards in Genomic Sciences

, 10:95

First Online: 11 November 2015Received: 15 September 2015Accepted: 02 November 2015

Abstract

Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence similarity to different Pantoea species P. vagans, P. ananatis, P. agglomerans, P. anthophila and Pantoea sp. and exhibits unique biochemical properties that do not allow strain identification up to species. Moreover, the strain 3.5.1 shows a low ANI and MALDI-TOF Mass Spectrometry scores. Thus, it is likely that the strain 3.5.1 represents a new Pantoea species. Here, we present the genome sequence of Pantoea sp. strain 3.5.1. The 4,964,649 bp draft genome consists of 23 contigs with 4,556 protein-coding and 143 RNA genes. Genome sequencing and annotation revealed two phytase genes and putative regulatory genes controlling its activity.

KeywordsStrain 3.5.1 Pantoea Genome 454 Ion Torrent Phytase AbbreviationsPSMPhytase screening medium

nr-ntnon-redundant nucleotide

Electronic supplementary materialThe online version of this article doi:10.1186-s40793-015-0093-y contains supplementary material, which is available to authorized users.

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Autor: Aliya D. Suleimanova - Anna A. Toymentseva - Eugenia A. Boulygina - Sergey V. Kazakov - Ayslu M. Mardanova - Nelly P. 

Fuente: https://link.springer.com/







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