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BMC Bioinformatics

, 13:267

Networks analysis

Abstract

BackgroundPlants are important as foods, pharmaceuticals, biorenewable chemicals, fuel resources, bioremediation tools and general tools for recombinant technology. The study of plant biological pathways is advanced by easy access to integrated data sources. Today, various plant data sources are scattered throughout the web, making it increasingly complicated to build comprehensive datasets.

ResultsMetNet Online is a web-based portal that provides access to a regulatory and metabolic plant pathway database. The database and portal integrate Arabidopsis, soybean Glycine max and grapevine Vitis vinifera data. Pathways are enriched with known or predicted information on sub cellular location. MetNet Online enables pathways, interactions and entities to be browsed or searched by multiple categories such as sub cellular compartment, pathway ontology, and GO term. In addition to this, the -My MetNet- feature allows registered users to bookmark content and track, import and export customized lists of entities. Users can also construct custom networks using existing pathways and-or interactions as building blocks.

ConclusionThe site can be reached athttp:-www.metnetonline.org. Extensive video tutorials on how to use the site are available throughhttp:-www.metnetonline.org-tutorial-.

Electronic supplementary materialThe online version of this article doi:10.1186-1471-2105-13-267 contains supplementary material, which is available to authorized users.

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Autor: Yves Sucaet - Yi Wang - Jie Li - Eve Syrkin Wurtele

Fuente: https://link.springer.com/



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